Poster Session (on May 28, 2017)

Your poster should be in the following dimensions at max: 90 cm width x 125 cm height (portrait). A0 paper fits well in this description. There will be 2 posters per side on the each poster board.

Poster # Authors Title 
1 Abdulahad Bayraktar A Study of Common Pathways of Neurodegenerative Diseases
2 Abubakhari Sserwadda and Ömer Sinan Saraç Investigating the effect of different feature selection strategies for classification of gene expression signatures of tumor cells
3 Ahmet Efe Koseoglu, Morteza Haghi, Ismail Karaboz and Cemal Un Detection of Heat Shock Protein (DnaK, DnaJ and GrpE) Horizontal Gene Transfers Among Acanthamoeba polyphaga, Acanthamoeba Polyphaga Mimivirus (APMV), Amoeba-Infecting Bacteria and Sputnik Virophage
4 Ahmet Efe Koseoglu, Muhammet Uslupehlivan, Zarifa Osmanli and Cemal Un Posttranslational Modifications of α-Conotoxin and Their Effect on Feeding Type of Conus Species
5 Ahmet Faruk Acar, Johan Sanmartin Berglund and Peter Anderberg SPOKEN DIALOGUE INTERFACE FOR THE SMART4MD APPLICATION
6* Ahmet Süreyya Rifaioğlu, Maria Martin, Rengul Cetin-Atalay, Volkan Atalay and Tunca Dogan Investigation of Multi-task Deep Neural Networks in Automated Protein Function Prediction
7 Alperen Dalkiran, Ahmet Süreyya Rifaioğlu, Tunca Dogan, Volkan Atalay, Maria Martin and Rengul Cetin-Atalay Prediction of Enzymatic Properties of Protein Sequences Based on the EC Nomenclature
8* Arif Yılmaz and Yeşim Aydın Son Lossless Pruning of AHP SNP Prioritizaton Tree Using Random Forest Variable Importances
9 Aydanur Şentürk, Erdem Sanal and Nurhan Özlü Global Phosphoproteome Analysis of Xenopus laevis egg extracts
10 Ayhan Serkan Şik, Yeşim Aydın Son, Ergin Soysal and Arsev Umur Aydınoğlu A Conceptual Design for Genetic Information Exchange Coding Standards in Turkey
11 Ayşe Derya Cavga, Mehmet Tardu, Attila Gürsoy, Özlem Keskin and Halil Kavaklı Cryptochrome mutations in p53 mutant mice increase anti-carcinogenic pathways and damage responses
12 Ayşegül Tombuloğlu, Hülya Çöpoğlu, Tülin Güray and Yeşim Aydın Son CHANGES IN GENE EXPRESSION PROFILE OF HUMAN HEPATOCELLULAR CARCINOMA CELL LINE (HEPG2) INDUCED BY BORIC ACID AT HALF MAXIMAL INHIBITORY CONCENTRATION (IC50)
13 Beste Mimaroğlu Altınay and Yeşim Aydın Son A DATA MINING APPROACH FOR DIRECTING THE PATIENT TO APPROPRIATE TREATMENT METHOD IN PAIN CLINIC
14 Bunyamin Kasap, Serbulent Unsal, Zeliha Kasap, Aybar Can Acar and Kemal Turhan A Method Proposal for Revealing Epigenetic Immune-Escape Mechanisms Using 450k Methylation Array Data.
15 Burçin Kurt, Serbülent Ünsal, İlknur Buçan Kırkbir and Kemal Turhan Survival and Enrichment Analyzes of Cisplatin-Based Drug Resistance-Related Genes for Non-Small Cell Lung Cancer
16 Burcu Karakaya, Gizem Kars, Negin Razizadeh, Çağla Ece Olgun, Pelin Yaşar, Gamze Ayaz and Mesut Muyan Assessing putative protein partners of selected estrogen responsive gene products by a yeast-two-hybrid approach#
17 Burcu Turanlı-Yıldız and Mete Yılmaz Molecular Phylogenetics of Heme Oxygenase in Cyanobacteria
18 Burcu Yaldiz and Yesim Aydin Son STRUCTURAL PROPERTIES OF METHYLATED HUMAN PROMOTER REGIONS IN TERMS OF DNA HELICAL RISE
19 Çağla Ece Olgun, Gamze Ayaz, Burcu Karakaya, Gizem Kars, Negin Razizadeh, Pelin Yaşar, Nurcan Tuncbağ and Mesut Muyan Towards proteomic analysis of YPEL2 interacting partners identified with proximity-dependent biotinylation#
20 Can Firtina, A. Ercument Cicek and Can Alkan A Profile HMM-based hybrid error correction algorithm for long sequencing reads
21 Cansu Dincer and Nurcan Tuncbag Structural Modeling of the Patient-Specific Signaling Networks in Glioblastoma
22* Cesim Erten, Evis Hoxha, Hilal Kazan and Esra Tepe Identification of dysregulated pathways across multiple cancer types
23 Damla Gozen, Huma Shehwana, Ozlen Konu, Tunca Dogan and Rengul Atalay The identification of oxidative stress related gene profiles in liver cancer cells as targets for diagnostics and therapeutics
24* Elif Bozlak, Yetkin Alıcı, Evrim Fer, Melike Dönertaş, Rasmus Nielsen and Mehmet Somel Neighbouring sequence context-based fixation bias of mutations in chimpanzee genome
25* Emrah Akkoyun, Aybar Can Acar, Byron Zambrano and Seungik Baek Cardiovascular Modelling for Abdominal Aortic Aneurysms
26 Erdem Şanal and Nurhan Ozlu Quantitative and Network Analysis of Cytokinesis Specific Phosphoproteins
27* Erdem Turk and Baris Suzek Leveraging Taxonomic Ranks for Improving MirrorTree-based Protein Interaction Prediction
28* Ezgi Karaca, João Rodrigues, Andrea Graziadei, Alexandre Bonvin and Teresa Carlomagno An Integrative Framework for Structure Determination of Molecular Machines
29 Farideh Halakou, Emel Sen Kilic, Ozlem Keskin and Attila Gursoy Multiple Conformations of Proteins Enhance Protein-protein Interaction Networks
30* Fatih Karaoglanoglu, Marzieh Eslami Rasekh and Can Alkan Discovering Large Genomic Inversions Using Long-range Information
31 Gamze Ayaz, Pelin Yaşar, Burcu Karakaya, Çağla Ece Olgun, Gizem Kars, Negin Razizadeh, Şeyma Ünsal, Nurcan Tunçbağ and Mesut Muyan Protein interaction approaches to assign a function for an estrogen responsive gene protein: CXXC5#
32 Gökçe Senger and Nurcan Tunçbağ Network Modeling of the Dasatinib Treatment in Glioblastoma Stem Cells by Data Integration
33 Gökhan Özsarı, Ahmet Sureyya Rifaioglu, Tunca Doğan, Rengül Çetin-Atalay and Mehmet Volkan Atalay Hierarchical Subcellular Localization Prediction using Support Vector Machines
34 Gulden Olgun, Ozgur Sahin and Oznur Tastan Discovering Breast Cancer Subtype Specific lncRNA Mediated ceRNA Interactions
35 Gülşah Karaduman Bahçe and Yeşim Aydın Son Genome-wide Analysis of Splice Acceptor Site Motifs
36 Gungor Budak, Ernest Fraenkel and Nurcan Tuncbag Identification of the Pathway Level Ischemic Changes by Integrating Temporal Phosphoproteome in Ovarian Cancer
37* Guvanch Ovezmyradov Integrative bioinformatics analysis of multi-omics data facilitates functional characterization of the candiate tumor suppressor protein CTCF
38 Habibe Cansu Demirel and Nurcan Tuncbag The Effect of Alternative Splicing on Tumor Specific Protein Networks
39* Handan Melike Dönertaş and Janet Thornton Drug Repurposing for Ageing: A Connectivity Map Approach
40 Hatice Büşra Konuk, Muhammet Raşit Cesur and Alper Yılmaz IDENTIFICATION of TISSUE SPECIFIC GENES and ASSESMENT of THEIR INTERSECTION WITH DIFFERENTIALY EXPRESSED GENES in CANCER DATA to UNDERSTAND TUMOR HETEROGENEITY IN SILICO
41 Huseyin Alper Döm and Yesim Aydın Son A FEATURE SELECTION MODEL FOR GENOME WIDE ASSOCIATION STUDIES OF SCHIZOPHRENIA
42 Idil Yet, Poorya Parvizi, Ulas Isildak, Zeliha Gozde Turan and Mehmet Somel Studying structural variation among neurons at old age and in Alzheimer’s Disease using single cell whole genome sequencing
43* İlknur Buçan Kırkbir, Burçin Kurt and Kemal Turhan A Computer Aided Diagnosis System for Heart Attack Using Decision Tree
44* Koray Açıcı, Çağatay Berke Erdaş, Tunç Aşuroğlu, Münire Kılınç Toprak, Hamit Erdem and Hasan Oğul Wearable Solutions for Parkinson’s Disease Monitoring
45 Kubra Narci, Tunca Dogan, Aybar Can Acar, Tulin Ersahin, Nurcan Tuncbag and Rengul Cetin Atalay Systems Biology Analysis of Kinase Inhibitors in Cancer Cells Using Next Generation Sequencing Data
46 Malik Yousef, Waleed Khalifa and Loai Abdallah Ensemble Clustering Classification Applied on Plant microRNAs Data
47 Mehmet Ozcan, Turgut Bastug, Ali Osman Acar and Yasemin Aksoy Computational assessment of the most potential inhibitors for Glutathione S-transferase P1-1
48 Meltem Eda Omur, Esref Celik, Bilal Kerman and Emre Karakoc MYELIN INTERACTOME : IDENTIFICATION OF CELL-CELL INTERACTIONS IN MULTIPLE SCLEROSIS VIA BIPARTITE GRAPH BASED PROTEIN-PROTEIN INTERACTION NETWORKS
49 Meric Kinali, Tunca Dogan and Rengul Cetin-Atalay Differential analysis of Hepatocellular Carcinoma Kinome by Chemical and Genetic Knockouts
50 Merih Alphan Karadeniz, Erkan Unal Mumcuoglu and Guy Perkins Automatic Segmentation of Cristae in 3D Electron Microscopy Tomography Images Using an Artificial Neural Network and Directional Growing
51 Merve Akkulak, Emre Evin, Özlem Durukan, Güneş Özhan and Orhan Adalı Effect of resveratrol on mRNA and protein expressions of Vitamin D metabolizing CYP24A1 in human embryonic kidney cell line (HEK-293)
52* Mona Shojaei, Ece Akhan, Aybar Can Acar and Rengül Çetin Atalay IDENTIFICATION OF GENE MUTATIONS INVOLVED IN DRUG RESISTANCE IN LIVER CANCER USING RNA-SEQ DATA ANALYSIS
53 Muhammet Uslupehlivan, Ecem Şener and Remziye Deveci In silico Analysis of the Pax6 Protein Glycosylation
54 Muhammet Uslupehlivan, Remziye Deveci and Cemal Ün In silico Approach to Relation of Prion Protein Glycosylation with Scrapie Disease Resistance in Domestic Sheep
55 Mustafa Tarım and Celal Öztürk METABOLIC PROFILING USING PARTIAL LEAST SQUARES DISCRIMINANT ANALYSIS WITH ARTIFICIAL BEE COLONY ALGORITHM
56 Nogayhan Seymen and Ege Ulgen Comparison of Different Approaches to Classify Recurrence of Breast Cancer
57 Nurcan Tuncbag and Ernest Fraenkel Patient-specific Network Modeling in Glioblastoma
58* Oguzhan Begik, Merve Oyken, Tuna Cinkilli Alican, Tolga Can and Ayse Elif Erson Bensan Alternative polyadenylation patterns for cancer classification
59 Oğuzhan Kalyon and Alper Yılmaz SURVEY OF CHIMERIC mRNAs IN HIV INFECTED PATIENT RNA-SEQ DATA
60 Özlem Durukan, Merve Akkulak, Sena Gjota Ergin, Şevki Arslan and Orhan Adalı Metformin-Cisplatin combination treatment alters gene and protein expressions of CYP17A1 in LNCaP cell line
61 Özlem Özkan, Yeşim Aydın Son, Arsev Umur Aydınoğlu, Ahmet Yalçın, Alper Döm, Burcu Yaldız, Kübra Narcı and Onur Baloğlu Participatory Design Meetings: Genetic Information Included Personal Health Record Application
62 Poorya Parvizi, Mehmet Somel and Nurcan Tuncbag Network Analysis of Transcriptomic Changes During Aging
63* Rabie Saidi, Maryam Abdollahyan and Maria Martin A Self-training Approach for Functional Annotation of UniProtKB Proteins
64* Remzi Çelebi, Erkan Yaşar, Özgür Gümüş and Oğuz Dikenelli RDF Graph Embeddings for Prediction of Drug-Drug Interactions
65 Rumeysa Fayetörbay, Tulin Ersahin, Rengül Cetin Atalay and Nurcan Tunçbağ Network-Based Discovery of Drug Treatments in Hepatocellular Carcinoma
66 Saber Hafezqorani and Hilal Kazan Genome-wide analysis for identification of lncRNAs that sponge RNA-binding proteins
67* Sedef Erkunt, Necati Altindis, Ahmet Efe Koseoglu and Cemal Un Use of miRNA in struggling of Varroa parasite
68* Serena Muratcıoğlu, Hyunbum Jang, Attila Gursoy, Ozlem Keskin and Ruth Nussinov Interaction of farnesylated, but likely depalmitoylated, Ras isoforms with PDEδ
69* Sıla Özdemir, Attila Gursoy and Ozlem Keskin Analysis of single amino acid variations in hot spot and hot region residues of protein-protein interaction interfaces
70 Tuba Ege, Ayşe Mine GenÇler-Özkan, Alaattin Şen and Orhan Adalı Folk Medicinal Plant Epilobium hirsutum L. and Its Ingredient Ellagic Acid Alters Protein and mRNA Expressions of Rat Liver Bile Acid Synthesizing CYP7A1
71* Tunde Aderinwale and Hilal Kazan INTEGRATING MULTIPLE DATA TYPES FOR CANCER SUBTYPE DISCOVERY
72 Uğur Sezerman, Zeynep Özkeserli and Begüm Özemek Possible Usage of Expression of Certain CLOCK Genes as a predictor of survival in AML cancer patients
73 Uğur Toprak, Serbülent Ünsal and Kemal Turhan Comparing Survival Times of Lung Squamous Cell Carcinoma Patients from Combined RNA-seq and Methylation Data by Estimating Risk Groups
74 Umut Agyuz, Ahmet Melih Oten, Oktay Kaplan and Suleyman Nezih Hekim Does Mitochondrial Genes Pass to Fetus From Mother or Father
75 Yusuf Bayrakceken, Zeliha Gunnur Dikmen and Filiz Akbiyik The Calculation of Reference Change Value for Coagulation Test Parameters
76 Yves Yannick Yameni Noupoue Biometric Encryption: From fingerprint Image to personal unique and irrevocable key.
77 Hamit İzgi, Mehmet Somel Meta-Analysis of Alzheimer’s Disease at the Gene Expression Level
78 Can Koşukcu, Aslı Küçükosmanoğlu, Yasemin Alanay, Pınar Kavak, Nilüfer Berker, Ekim Z. Taşkıran, Mehmet Alikaşifoğlu, Uğur Sezerman, Nurten A. Akarsu Identification of Molecular Pathology of Peters’ Anomaly Segregating in a Large Autosomal Dominant Family

* These submissions are also accepted as an oral presentation.